Experience

 
 
 
 
 

Assistant Professor

Radboud University Medical Center

May 2016 – Present Nijmegen, the Netherlands
Assistant professor in computation pathology
 
 
 
 
 

Postdoctoral Researcher

University of Heidelberg

May 2015 – April 2016 Heidelberg, Germany
Research projects on prostate cancer immunotherapy and lung adenocarcinoma subtyping.
 
 
 
 
 

Postdoctoral Researcher

Radboud University Medical Center

January 2015 – April 2015 Nijmegen, the Netherlands
Research projects on automated breast cancer metastases detection in lymph nodes and prostate cancer segmentation in biopsies using deep learning.

Grants & Awards

Radboud Science Award

StITpro Pathologie II Grant

  • Organisation: StITPro
  • Year: 2017
  • Amount: 220 k€

Veni Grant

  • Organisation: NWO
  • Year: 2017
  • Amount: 250 k€

Bas Mulder / Young Investigator Grant

Radboud Institute of Health Sciences Best PhD Thesis - Runner-up

Alexander von Humboldt Postdoctoral Fellowship

Robert F. Wagner Best Student Paper Award - Runner-up

  • Organisation: SPIE
  • Year: 2014

MICCAI Student Travel Award

  • Organisation: MICCAI
  • Year: 2012

Organized Scientific Meetings

SPIE Medical Imaging

  • Role: Program Committee
  • Year: 2019

MIDL (Medical Imaging with Deep Learning) Conference

  • Role: Program Chair
  • Year: 2018

SPIE Medical Imaging

  • Role: Program Committee
  • Year: 2018

Invited Lectures

Swedish Deep Learning Conference

  • Location: Norrköping, Sweden
  • Year: 2019

Nordic Pathology Symposium

  • Location: Linköping, Sweden
  • Year: 2019

NWO Bessensap

  • Location: Amsterdam, the Netherlands
  • Year: 2018

Dutch Pathology Days

  • Location: Ede, the Netherlands
  • Year: 2018

Pathology Visions Conference

  • Location: San Diego, United States of America
  • Year: 2017

Congress Dutch Pediatric Medicine Society

  • Location: Arnhem, the Netherlands
  • Year: 2017

ISBI CAMELYON17 Workshop

  • Location: Melbourne, Australia
  • Year: 2017

MICCAI Medical Computer Vision Workshop

  • Location: Athens, Greece
  • Year: 2016

MICCAI Computational Precision Medicine Workshop

  • Location: Athens, Greece
  • Year: 2016

Digital Pathology Congress

  • Location: London, United Kingdom
  • Year: 2016

European Conference of Pathology - Computational Pathology Symposium

  • Location: Cologne, Germany
  • Year: 2016

Skills

Python

Extensive experience with Python for data science and machine learning. Often used package include Numpy, Scipy, Tensorflow, Theano, and Matplotlib.

C++

I used C++ for the development of image analysis algorithms using ITK and MeVisLab. In addition, ASAP is an open source Qt-based C++ application, developed for both Windows and Linux.

Git/Github

All software and algorithms I develop are under version control. Nowadays we make extensive use of Git and Github for source code management.

Pathology

Since 2014 my research has focused on challenges in diagnostic pathology. This has helped me attain knowledge on pathologist’s workflows in many application, with emphasis on those in oncology.

Radiology

During my MSc and PhD theses I worked at a major radiology hardware vendor and at a radiology department. I have some experience with all imaging modalities common in radiology, but most expertise with different types of MR imaging.

Data Analysis & Statistics

I have taken several (bio-)statistics courses and have working experience with advanced statistical methods. Examples include survival analysis and mixex models.

Deep Learning

Since 2013 I have been developing algorithms based on deep learning, initially with Theano, later with TensorFlow. My initial work and that of many others is covered in our survey.

Medical Image Analysis

I have been working on impage processing tools for over a decade and have applied, among others, image registration, filtering, and morphological image processing in different projects.

Languages

Dutch: native
English: fluent
German: intermediate
French: basic